Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs4984980 chr16:968292 G/A 0.000118 281 27.43 25.97 15.53 KM Plot
KIRP rs4984981 chr16:969319 G/A 1.81E-5 284 27.75 25.57 14.83 KM Plot
KIRP rs4984983 chr16:974076 T/A 0.000109 284 26.83 25.97 14.83 KM Plot
KIRP rs4984985 chr16:978210 C/T 9.89E-5 286 26.63 26.57 14.83 KM Plot
KIRP rs4984986 chr16:978371 A/G 9.89E-5 286 26.63 26.57 14.83 KM Plot
KIRP rs4990735 chr1:209943592 C/T 6.78E-6 276 25.5 26.37 19.85 KM Plot
KIRP rs501773 chr17:30314435 T/G 9.37E-12 286 26.6 23.85 10.37 KM Plot
KIRP rs530715 chr17:30320544 T/G 8.49E-12 287 26.6 23.4 10.37 KM Plot
KIRP rs546519 chr17:30297682 T/G 2.52E-12 283 26.6 24.3 10.37 KM Plot
KIRP rs547473 chr17:30297560 T/G 2.52E-12 283 26.6 24.3 10.37 KM Plot
KIRP rs548298 chr17:30297494 C/A 2.52E-12 283 26.6 24.3 10.37 KM Plot
KIRP rs550213 chr17:30317518 C/G 8.49E-12 287 26.6 23.4 10.37 KM Plot
KIRP rs55645258 chr16:3653479 A/C 0.00011 285 26.2 22.37 19.9 KM Plot
KIRP rs55661575 chr10:94825108 C/T 1.44E-9 281 26.1 21.48 9 KM Plot
KIRP rs55663200 chr7:20689015 C/T 2.03E-5 289 25.82 23.1 11.2 KM Plot